Validation of Growth Inhibition Assay using testassay3 months ago
Introduction | Analysis | References
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Direct enumeration of the hyperarc encoding4 months ago
Introduction | Setup | Local encoding: $|R| = 16$ | Direct enumeration of valid hyperarcs | Verifying identical sharp bounds | Local encoding bounds via causaloptim | Hyperarc bounds | Symbolic comparison | References
Improving the speed of computing causal bounds6 months ago
What is causaloptim? | Background | Efficiency matters! | How does causaloptim work? | Response Function Variables | Parameters and their Relationships | Linear Programming | Vertex Enumeration | References
Basic Examples1 years ago
Maximum of parameters | References
Introduction to Principal Surrogate Evaluation in R2 years ago
Methods | Introduction | Notation | Estimands | Principal Surrogate Criteria | Augmentation and Assumptions | BIP | CPV | BSM | Estimated Maximum Likelihood | Package features | Package information | Installation | Usage | The "psdesign" object | Integration models | Risk models and likelihoods | Estimation and Bootstrap | Do it all at once | Plots and summaries | Summary and Conclusion | Appendix | Additional examples | Plot both types of CI | Plot with ggplot2 | Case-control design | Survival outcome | Continuous outcome | Categorical S | Pseudo-score | Bug reports | References
Implementing custom and new methods for standardization2 years ago
General implementation
Estimation of causal effects using stdReg22 years ago
Introduction and context | Regression standardization | Improving robustness by modeling the exposure | In practice | Other outcome types
Code from examples in manuscript2 years ago
confounded exposure and outcome | multiple instruments | measurement error in the outcome
Examples of using eventglm and interpreting the results3 years ago
Colon cancer treatment and time to death (standard survival) | Models for survival | Multiple time points (New in version 1.2.0) | Censoring assumptions | Monoclonal gammopathy data (Competing risks) | Relative survival/net survival | Case cohort sampling | References
Comparison of Methods in the Rotterdam Data3 years ago
Generate ROC Curve Charts for Print and Interactive Use3 years ago
Introduction | About ROC Curves | Motivation | Usage | Shiny application | Installation and loading | Quick start | Command line basic usage | The Roc Geom | Confidence regions and the Rocci Geom | Interactive Plots | Multiple ROC curves | New Features | AUC tables | Custom labels and locations | Increasing parameter | Advanced options | Themes and annotations | Other estimation methods | Acknowledgements
How to use the causaloptim Shiny app to analyze graphs3 years ago
Specifying the causal effect of interest | Specifying constraints (optional) | Computation of the bounds
Comparison to other software4 years ago
R code and results | Stata code and results | SAS code and results
Extending eventglm4 years ago
Pseudo observation computation modules | Custom computation functions | Example: Parametric pseudo observations | Example 2: infinitesimal jackknife | Conclusion
Tufte-style Handouts for Web Use12 years ago
Introduction | Usage | Resources | Learn more about rmarkdown: http://rmarkdown.rstudio.com